Well everything (except for the shutdown issue) seems to be fixed!! I'm so happy.
Thanks to everyone here, and especially to my mate (also my free network helpdesk haha) for helping me fix it.
We remoted into the server and changed the Jumbo Frame size from 4 to 7 Mtu and that solved the stop/resume issue i was having.
We also fixed another problem i was having with accessing files i recently moved to the sever by going to videos/properties/ and then selecting the "inheret rights" tick box. Seems some of my videos which i thought were corrupt we actually just restricted due to some permissions doing funny things.
I'm thinking now that i didnt need to remove the utorrent service (as i blamed it for my problems), although i think i'll leave the server alone now its running smoothly again and use my old and unused laptop as a utorrent downloads computer.
So thank you guys
